• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Homemade On Purpose
  • About
    • Privacy Policy
  • Homemaking
    • Motherhood
    • In the Kitchen
      • Breakfast
      • Lunch/Dinner
        • Side Dishes
        • Main Dishes
      • Dessert
      • Snacks
      • Baked Goods
      • From Scratch Staples
    • Crafts
    • Frugal Living
  • Homesteading
    • Gardening
      • Free Florida Gardening Guide
      • Summer Gardening
      • Fall/Winter/Spring Gardening
      • Frugal Gardening
    • Preservation
      • Water Bath Canning
    • Homemade Soap
  • Homeschooling
    • Crafts

Healthy Chocolate Chip Zucchini Muffins

June 18, 2026 by Emily Leave a Comment

Jump to Recipe Print Recipe

Muffins are a go to quick snack in our home. They are easy to make and kinda taste like dessert 😀 Sneak in some veggies and you’ve got a nourishing treat your family, especially your kids will love. These healthy chocolate chip zucchini muffins use simple, nourishing ingredients you’ll love. Oh, and no processed sugars, you are welcome 😁

This post may contain affiliate links. As an Amazon Associate, I earn from qualifying purchases. I’ll never share a link to something that I don’t personally use and love. Read my full disclosure here.

Ingredients

ingredients for healthy chocolate zucchini muffins
  • Zucchini’s – one medium sized or two small ones. About 1 1/2 to 2 cups worth grated. Don’t strain out the juices either! I love this grater for everything from veggies to cheese. Unlike other graters, I’ve never been cut using this one.
  • Banana – this gives these muffins a little bit of sweetness and some extra vitamins and minerals. It gives these muffins the slightest hint of a chocolate banana bread flavor. We buy our banana’s in bulk from Costco where they cost less then $2 per bunch. Then we freeze them to use in smoothies, milk shakes and baked goods. If you’ve never tried a milk shake made with frozen banana’s and milk, you are missing out my friend.
  • Whole wheat – you can also make this with all purpose flour, but the whole wheat gives a greater depth of flavor to these muffins and so many more health benefits than all purpose flour does. If you are able to mill your own grains even better!
  • Baking powder and baking soda – if you can, buy baking powder that doesn’t have aluminum in it. We really don’t need aluminum in our bodies.
  • Salt – use an unrefined mineral salt for maximum health benefits. We love Redmond’s Real Salt.
  • Cocoa powder – you can also use cacao powder for a less processed version.
  • Maple syrup or honey – With a nine month old, we’ve opted for maple syrup in our baking lately. Honey is not safe for children under the age of 1. Otherwise honey is a great natural sweetener in this recipe and many other sweet treats.
  • Yogurt – this is optional, I’ve made these muffins without yogurt with great results. It does give a bit of extra fluff and softness to the muffins so if you have it on hand, use it. Making your own yogurt is also a great way to cut costs on your grocery bill.
  • Chocolate chips – we love dark chocolate, especially this kind. It only has three ingredients even my toddler can pronounce.

How to make healthy chocolate zucchini muffins

Preheat your oven to 350F. Grease a mini muffin tin with butter or other neutral fat/oil and set it aside. You could also make full sized muffins, but the mini ones are so fun and make the perfect little snack.

Go ahead and grate your zucchini and mash your banana now.

grating zucchini
mashed banana in glass measuring cup

In a mixing bowl add whole wheat flour, baking soda, baking powder, cocoa powder, and salt. Whisk to combine. If your cocoa powder is lumpy sift it before adding it to the bowl with the other dry ingredients.

dry ingredients for healthy chocolate zucchini in stainless steel mixing bowl

Then throw in the yogurt, maple syrup, zucchini, and banana. Mix that all up. The batter will be slightly thick, a wooden spoon or rubber spatula works really well for mixing the batter.

mashed banana, grated zucchini and yogurt being added to dry ingredients

Last, but not least, mix in your chocolate chips.

chocolate chips on top of healthy chocolate zucchini muffin batter

Using a small cookie scooper, fill your prepared muffin tin. The 1tbsp cookie scooper is the perfect size for these mini muffins!

muffin batter in mini muffin tin

Bake for 15 minutes or until a toothpick comes out clean. If making full sized muffins, cook for 20-25 minutes or so. Pop them out of the baking sheet to cool for a few minutes before enjoying. These are seriously so good, they don’t last long in our house. If you do end up with leftovers, store them in the fridge or freeze them for later.

cooked healthy chocolate zucchini muffins

That’s really all there is to these healthy chocolate zucchini muffins, if you try them let me know how you liked them in the comments below!

Happy baking!

Healthy Chocolate Zucchini Muffins

These muffins are so simple to make and use only whole ingredients for a nourishing treat or snack. They are so yummy you could even use them as a dessert!
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 15 minutes mins
Servings: 32 mini muffins
Ingredients Method Notes

Ingredients
  

  • 1 medium zucchini, grated or two small, about 1 1/2 – 2 cups
  • 1 banana overripe
  • 220 g whole wheat about 1 2/3 cup
  • 1 tsp baking soda
  • 1 tsp baking powder
  • 1/2 tsp salt
  • 30 g cocoa powder about 1/3 cup
  • 1/2 cup maple syrup
  • 1/2 cup dark chocolate chips or chocolate of choice
  • 1/4 cup yogurt

Method
 

  1. Preheat oven to 350F and grease your muffin tin.
  2. Grate zucchini and mash banana. Do not strain zucchini.
  3. In a mixing bowl combine flour, cocoa powder, salt, baking powder and baking soda. Whisk thoroughly.
  4. Add grated zucchini, mashed banana, maple syrup, and yogurt to dry ingredients. Combine. Batter will be thick.
  5. Fold in chocolate chips.
  6. Fill muffin tin 3/4 of the way full with batter. A small cookie scoop makes quick work of this step.
  7. Bake mini muffins for 10-15 minutes and full sized muffins for 20-25 minutes or until a toothpick comes out clean.

Notes

Oven temperatures vary as do the moisture in zucchini’s. Depending on those factors your muffins may take more or less time to bake. 
Store leftovers in the fridge for the best flavor over time… if they last long enough for there to be leftovers.

Filed Under: Baked Goods, Dessert, Homemaking, In the Kitchen, Snacks Tagged With: baked goods, chocolate zucchini muffins, from scratch, healthy chocolate zucchini muffins, healthy desserts, healthy muffins, healthy snacks, homemaking, mini muffins, muffins, zucchini muffins

Previous Post: « Cookies And Cream Cheesecake Recipe

Reader Interactions

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




Primary Sidebar

Let’s Connect!

  • Etsy
  • Pinterest

Hi guys!

Hi! I’m Emily and that handsome man is my hubby. I’m a wife, mother of four handsome boys, avid gardener and homemaker. Follow along for healthy recipes, gardening and homemaking tips, and so much more! Read more about me here.

Recent Comments

  1. Meredith on Honey Oat Sweet Rolls Recipe
  2. Tina on Honey Oat Sweet Rolls Recipe
  3. Annabelle on Honey Oat Sweet Rolls Recipe
  4. Kelly Letalien on Honey Oat Sweet Rolls Recipe
  5. Kaitlin on Honey Sweetened Carrot Cake Cupcakes

Copyright © 2026 Homemade On Purpose on the Foodie Pro Theme