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Honey Sweetened Carrot Cake Cupcakes

March 26, 2026 by Emily 1 Comment

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Want to enjoy desserts without feeling guilty? And feel good knowing your kids are eating something nourishing as well as super tasty? These honey sweetened carrot cake cupcakes definitely fit that bill. With no processed sugars, a cup of carrots, and a healthier frosting, this is a dessert you and your family will love.

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Ingredients for carrot cake cupcakes

honey sweetened carrot cake cupcakes ingredients
  • All purpose flour – organic, unbleached.
  • Baking powder – aluminum free if you can find it, or buy it online. Maybe I’m oblivious but I only recently realized most baking powder brands have aluminum in it…
  • Baking soda
  • Salt – we only use Redmond’s Real Salt in our home. A good quality unrefined mineral salt goes a long way towards nourishing your body.
  • Egg – eggs from pastured chickens, or those who have the pasture brought to them, are going to be the most nourishing eggs. If you can afford them, buy good quality eggs.
  • Yogurt – we make this ourselves so that it’s super cheap and packed with live gut healthy bacteria. Don’t have yogurt? Add in sour cream, buttermilk, or some sourdough discard instead.
  • Butter – you can brown the butter for these cupcakes if you’d like a little extra depth of flavor. Both browned and simply melted butter make for such a delicious end result. You can sub the butter for coconut or avocado oil if needed.
  • Honey – buy local if you can. Honey is one of the easiest foods to get started with buying local. You don’t have to buy half a cow’s worth of it, which makes honey much less intimidating for those of us who are used to shopping at the grocery store. 🙂
  • Carrots – buying the carrot roots whole, not the ones cut down into smaller, prettier pieces is going to be the most affordable option. Plus this gives us carrot scraps that we can add to our broth pot.
  • Cinnamon
  • Vanilla – the real stuff, please.

How to make Carrot Cupcakes

To start, preheat your oven to 350 and prepare your muffin tin either by lining it with cupcake liners or greasing it. Set it aside and move on to making your cake batter.

In a medium sized mixing bowl, whisk together flour, baking soda, baking powder, salt and cinnamon.

flour, baking powder, cinnamon, and salt in mixing bowl
dry ingredients mixed up

In a separate, larger bowl whisk together the yogurt, honey, melted or browned butter, egg, and vanilla. Add the dry ingredients to the wet ingredients and mix it all up until it’s fully incorporated. Then lastly add in the grated carrots and stir.

yogurt, honey, egg and vanilla in mixing bowl
mixed wet ingredients
carrot cupcake batter
shredded carrots being added to cake batter

Pour the batter into your prepared muffin tin, each should be filled 2/3-3/4 of the way. Bake for 20 minutes or until a toothpick comes out clean.

honey sweetened carrot cake cupcakes batter in mixing bowl
honey sweetened carrot cake cupcake batter in muffin tin

Let the cupcakes cool in the muffin tin for a few minutes before taking them out to cool further. These are a very soft cupcake, especially when hot out of the oven.

fully cooked honey sweetened carrot cake cupcakes in muffin tin

Let them cool completely before topping with frosting. (Or just eat them as is, they are soooo yummy 😋)

Yogurt Cream Cheese Frosting

This is optional, you can eat these honey sweetened carrot cake cupcakes just the way they are or use your favorite frosting to top these off. If you’re looking for a healthier option for a frosting, here’s what you’ll need:

ingredients for cream cheese, yogurt frosting
  • Cream cheese
  • Yogurt – greek yogurt, or strain your homemade yogurt so it’s extra thick
  • Honey or maple syrup
  • Vanilla
  • Salt

This is a soft frosting, but it’s so yummy you’re kids will love it. Add all of the ingredients into a mixing bowl and whisk until fully combined. You could also use a beater to make this a bit easier.

ingredients for healthy cream cheese frosting in mixing bowl
healthy cream cheese frosting in mixing bowl

Pipe this on top of your cooled cupcakes and enjoy! I hope you all love these carrot cake cupcakes as much as we do! Let me know how you guys like it in the comments below 🙂

frosted honey sweetened carrot cake cupcakes

Happy Baking! 😊

Honey Sweetened Carrot Cake Cupcakes

5 from 1 vote
This carrot cake cupcake recipe uses simple, wholesome ingredients that make a delicious sweet treat you can feel good about feeding your family.
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 20 minutes mins
Cool Time 20 minutes mins
Total Time 50 minutes mins
Servings: 12 cupcakes
Course: Dessert
Ingredients Method

Ingredients
  

Dry Ingredients
  • 1 1/4 cup all purpose flour organic, unbleached
  • 2 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1 1/2 tsp cinnamon
Wet Ingredients
  • 1 large egg
  • 1/2 cup yogurt
  • 1/2 cup butter melted or browned
  • 2/3 cup honey or maple syrup
  • 1 tsp vanilla
Add Ins
  • 1 cup grated carrots
Cream Cheese Frosting
  • 1 cup cream cheese softened
  • 1/4 cup yogurt greek yogurt or strained yogurt
  • 1/4 cup honey or maple syrup
  • 1/2 tsp vanilla
  • 1 pinch of salt

Method
 

  1. Preheat oven to 350F. Prepare a muffin tin with cupcake liners or grease it. Set aside.
  2. In a medium sized mixing bowl, whisk together flour, baking powder, baking soda, salt, and cinnamon.
  3. In a larger mixing bowl whisk together egg, yogurt, butter, honey and vanilla.
  4. Add dry ingredients to the wet ingredients and whisk to combine. Add in grated carrots and stir.
  5. Pour batter into prepared muffin tin, filling each cavity 2/3-3/4 of the way full.
  6. Bake for 20 minutes or until toothpick comes out clean. Let cool in the pan 3-5 minutes then remove them to cooling rack. Allow to cool completely.
Cream Cheese Frosting
  1. Combine all frosting ingredients, cream cheese, yogurt, honey/maple syrup, vanilla and salt into a medium sized mixing bowl. Whisk until fully combined and smooth. If frosting is very soft, chill in the fridge for ten to fifteen minutes before piping.
  2. Pipe frosting onto cooled cupcakes and serve.

Filed Under: Baked Goods, Dessert, Homemaking, In the Kitchen, Snacks Tagged With: carrot cake cupcakes, from scratch, healthy dessert, homemaking, honey sweetened carrot cake cupcakes, refined sugar free

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Comments

  1. Ellyn

    April 2, 2026 at 7:07 pm

    5 stars
    Perfect for Easter

    Reply

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Hi! I’m Emily and that handsome man is my hubby. I’m a wife, mother of four handsome boys, avid gardener and homemaker. Follow along for healthy recipes, gardening and homemaking tips, and so much more! Read more about me here.

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